PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_05977-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 284aa    MW: 30401.2 Da    PI: 6.0441
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_05977-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH452e-14117163455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A++++k+Lq
  TRIUR3_05977-P1 117 DHIMAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATRHVKELQ 163
                      699************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.65113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-18117175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-12117163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-17117177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.84E-15118167No hitNo description
SMARTSM003535.1E-15119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDDSALFMEW AMDTLEQEHP DPVVVHVNGD SGEAAFPSLQ ALREQRLLFE ELITGANPAN  60
SASSGETTDG SGGSGNFSSP AAMEHDVWRP SPNSARTAAR SPTSTGPVSS GPPYAQDHIM  120
AERKRREKIN QRFIELSTVI PGLKKMDKAT ILSDATRHVK ELQEKIKALE AAAGRSSRSN  180
ETVVLIKKKP RHADAALSDQ NGLTSSASSG APSGGNNPLP EIEVRFSETG VMVRILCHDV  240
QGVVVRVLSE VEEGLHLTVT HANVMPFTAC TVIITITAKA SFIP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121126ERKRRE
2122127RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659950.0AK365995.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039J24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559601.11e-97PREDICTED: transcription factor bHLH18-like
TrEMBLM8ANF80.0M8ANF8_TRIUA; Transcription factor bHLH25
STRINGBRADI1G12770.12e-96(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-37bHLH family protein